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managing data. It supports an unlimited variety of datatypes.
This package contains the gnu-hpc version utility functions for working
with HDF5 files. `s390zp37 0(SUSE Linux Enterprise 15 SUSE LLC BSD-3-Clause https://www.suse.com/ Productivity/Scientific/Other https://www.hdfgroup.org/HDF5/ linux s390x P H 0 Y p X Bh 0 p
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/bin/sh gnu-compilers-hpc libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_2.8)(64bit) libhdf5_1_10_7-gnu-hpc libhdf5_cpp_1_10_7-gnu-hpc libhdf5_fortran_1_10_7-gnu-hpc libhdf5_hl_1_10_7-gnu-hpc libhdf5_hl_cpp_1_10_7-gnu-hpc libhdf5hl_fortran_1_10_7-gnu-hpc libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2)(64bit) lua-lmod rpmlib(CompressedFileNames) rpmlib(FileDigests) rpmlib(PayloadFilesHavePrefix) rpmlib(PayloadIsXz) 3.0.4-1 4.6.0-1 4.0-1 5.2-1 4.14.1 `_:_{_@^@@^@^^%@]]߶]߶]@]w@]nU]_@] @\@\@\\y \y \d\J@\ 15.1.
- Enable openmpi3 builds for Leap and SLE > 15.1 (jsc#SLE-7773). - openmpi has been renamed into openmpi1 - Use -ffat-lto-objects to provide a proper static library. - Re-list hdf5-mpi.patch in the spec file for the sake of a avoiding
a script rejecting the package automatically. - Update to version 1.10.5: (jsc#SLE-8501)
* https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.5/src/hdf5-1.10.5-RELEASE.txt
- Security bugs fixed:
* CVE-2018-17233: A SIGFPE signal is raised in the function
H5D__create_chunk_file_map_hyper. (bsc#1109166)
* CVE-2018-17434: Memory leak in the H5O__chunk_deserialize()
function in H5Ocache.c (bsc#1109167)
* CVE-2018-17437: A SIGFPE signal is raised in the function
H5D__chunk_set_info_real. (bsc#1109168)
- Bump fortran library soname, sonum_F from 100 to 102.
- Adjust library installation path, use %hpc_prefix/lib64 in x86_64
and %hpc_libdir in all other cases
- Patches refreshed:
* hdf5-LD_LIBRARY_PATH.patch
* hdf5-1.8.11-abort_unknown_host_config.patch
* PPC64LE-Fix-long-double-handling.patch
* hdf5-Remove-timestamps-from-binaries.patch
* Disable-phdf5-tests.patch
- Patch disabled, upstream have changed the file that was being patched,
while it could be ported, it's unknown if this patch is still needed.
* hdf5-mpi.patch
- Patch removed, merged upstream
* 0001-Fix-return-value-in-test_libver_bounds_open.patch - Since build machine size issues do not seem to go way, make
the %check stage optional: enable with '--with check'. - set higher constraints for succesfull mpich tests (boo#133222) - Add _constraints to avoid transient build error ppc64le - Update URL: and Source: to use https://. - Like on PPC ignore transient 'make check' failures on aarch64. - Remove ringdisabled magic as hdf5 is no longer a ring package.
This should resolve a number of problems in the review channels
for Factory with packages requiring hdf5 libs. - Consolidate use of openmpi1, openmpi2, openmpi3 for non-HPC builds. - Remove dependency to the hdf5-devel-data file for HPC:
Currently, there are no macro files for HPC - these files
will have to be handled differently.
- Re-disable all non-HPC builds for SLE. - Reenable 'serial' build for SLE: this build creates hdf5-devel-data. - Do not build non-HPC on SLE: This helps to save some build
cycles. - Use upstream-recommended %{_rpmconfigdir}/macros.d directory
for the rpm macros. - Also build for regular openmpi2 and openmpi3 - Build HDF5 C++ bindings also for the MPI variants, there is no reason
not to do it.
- Enable sz2 support also for MPI variants. - Replace git-archive generated by downloaded tar-ball. - Update to 1.10.4:
https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.4/src/hdf5-1.10.4-RELEASE.txt
* Update Disable-phdf5-tests.patch
* Replace and update hdf5-buildcompare.patch by
hdf5-Remove-timestamps-from-binaries.patch - Remove lib*_cpp and lib*_hl_cpp dependencies for MPI for the time
being. - Create main master package, fix dependencies. - Update to 1.10.3:
https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.3/src/hdf5-1.10.3-RELEASE.txt
- Update to 1.10.2:
https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.2/src/hdf5-1.10.2-RELEASE.txt
- Bump soversions (101 -> 103) for libhdf5 and libhdf5_cpp
- Drop Fix-warnings-for-missing-returns.patch, fixed upstream
- Add 0001-Fix-return-value-in-test_libver_bounds_open.patch
- Rebase patches (tab / space conversion):
* PPC64LE-Fix-long-double-handling.patch
* hdf5-buildcompare.patch
* hdf5-mpi.patch
- Rebase Disable-phdf5-tests.patch
- Security bugs fixed:
* CVE-2017-17505: NULL pointer dereference in the function
H5O_pline_decode allowing for DoS via crafted file (bsc#1072087)
* CVE-2017-17506: Out of bounds read in the function
H5Opline_pline_decode (bsc#1072090)
* CVE-2017-17508: divide-by-zero vulnerability in function
H5T_set_loc (bsc#1072108)
* CVE-2017-17509: out of bounds write vulnerability in function
H5G__ent_decode_vec (bsc#1072111)
* CVE-2018-11202: NULL pointer dereference in H5S_hyper_make_spans
in H5Shyper.c allows a remote denial of service attack (bsc#1093641)
* CVE-2018-11203: division by zero in H5D__btree_decode_key in H5Dbtree.c
It could allow a remote denial of service attack (bsc#1093649)
* CVE-2018-11204: A NULL pointer dereference was discovered in
H5O__chunk_deserialize in H5Ocache.c (bsc#1093655)
* CVE-2018-11206: A out of bounds read was discovered
in H5O_fill_new_decode and H5O_fill_old_decode in H5Ofill.c
(bsc#1093657)
* CVE-2018-11207: division by zero was discovered in H5D__chunk_init
in H5Dchunk.c (bsc#1093653) - Handle license file using %license where applicable.
- Package example package also for HPC build and create
a master file for it. - Fix HPC library master packages dependency: make it require
the correct flavor (bsc#1091237). - Only build one examples package for all flavors, do not
include dependencies as these would be flavor specific
(bsc#1088547). - Fix some typos, one trivial, two mispelled macros - Trim description for size and drop most of the marketing blurb.
Fix RPM groups. - Make module files package arch dependent: it
contains arch-dependent paths (boo#1080442). - Prepend PKG_CONFIG_PATH in modules file (boo#1080426). - Add support for openmpi2 for HPC (FATE#325089). - Fix summary in module files (bnc#1080259) - Disable %check stage for mpich builds on s390(x) (bsc#1080022). - Disable the openmpi3 flavor in some products. - Switch from gcc6 to gcc7 as additional compiler flavor for HPC on SLES.
- Add support for mpich and openmpi3 for HPC. - temporarily disable make check for PowerPC boo#1058563 - Update to 1.10.1:
https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt
- Fix-warnings-for-missing-returns.patch:
replace: hdf5-non_void_return.patch
- PPC64LE-Fix-long-double-handling.patch:
replace: hdf5-ldouble-ppc64le.patch
- Disable-phdf5-tests.patch:
replace: hdf5_disable_testphdf5.patch
- Disabling validation tests for the MPI variant for now as they
seem to cause issues in OBS. - Fix name: baselib.conf -> baselibs.conf - Remove openssl-devel and krb5-devel from the BuildRequires. - Add magic to limit the number of flavors built in the OBS ring
to non-HPC and mvapich2 builds.
- Fix %libname() for non-HPC builds.
- Fix some summaries and a Requires: of devel-static. - Convert package to multibuild.
- Add HPC build using environment modules
(FATE#321717, FATE#321710). - fix compiler flag substitution - Add libsz2-devel to list of Requires for -devel packages, this
is required for compilation against hdf5 when szlib support is
enabled.
- Minor specfile cleanups using spec-cleaner. - Enabled szlib support through libaec's szlib API - Fix baselibs.conf so numbers.
Fixes bnc#1002569 - new hdf5_disable_testphdf5.patch to disable only testphdf5
for all arches and not all mpi tests for ppc64le
tempo patch as long as boo#997252 not solved - temporarily disable mpi test for ppc64le - update to 1.10.0-patch1
https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.0-patch1/src/hdf5-1.10.0-patch1-RELEASE.txt - update to 1.8.17, changes documented here:
https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.17/src/hdf5-1.8.17-RELEASE.txt - add hdf5-mpi.patch same as fedora commit id
78ddcff82b10fd80eafb7b2dc5e4ce2bb9ecbe3c
should avoid transient hung of t_pflush1 test - Split libraries into C, C++, and Fortran versions to comply with
openSUSE library packaging policies.
Fixes BNC#971602
- Make Fortran builds required.
- Manually set so numbers. The autodetected ones weren't matching
the real ones. - Remove timestamps from binaries
hdf5-buildcompare.patch - update to 1.8.16, changes documented here:
https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.16/src/hdf5-1.8.16-RELEASE.txt
- rebase hdf5-ldouble-ppc64le.patch
- remove hdf5-cpp-compilation-errors.patch
- prepare independent so versions and add TODO - Currently the regular, openmpi, and mpivachi2 versions of the
library packages all provide the exact same libraries. So any
package built against the -devel package will end up with an
"unresolvable" build error because there are multiple versions
of the library it can use. To avoid this, I have added generic
provides for the library package so packages can depend on the
version they really need, avoiding these build issues. - Add hdf5-cpp-compilation-errors.patch: Reverts a change from
v1.8.15 to H5api_adpt.h that caused compilation errors for C++
HDF5 applications; patch taken from upstream svn. - Update subpackage groups
- Make subpackage summaries and descriptions more consistent
- Provide rpm macros for version identification
- Spec file cleanups - Use explicit library requirements to avoid ambiguities.
Without this, packages that depend on hdf5 won't know which
library to use. - Fix baselibs.conf - update to 1.8.15
* New Features
+ Library
- Added Memory Allocation Functions that Use the Library's Allocator
- H5Pset_istore_k and H5Pset_sym_k added validation of "ik" to not
exceed the max v1 btree entries (2 bytes) to these two routines.
- Added Functions to Control the Value of H5PL_no_plugin_g without
Using an Environment Variable
+ Parallel Library
- Attached an attribute destroy callback to MPI_COMM_SELF that
shuts down the HDF5 library when MPI_COMM_SELF is destroyed,
in other words, on MPI_Finalize. This should fix several issues
that users see when they forget to close HDF5 objects before
+ Fortran API
- Added Global Variables. These new global variables are equivalent to
the C definitions without the '_F':
o H5G_UDLINK_F
o H5G_SAME_LOC_F
o H5O_TYPE_UNKNOWN_F
o H5O_TYPE_GROUP_F
o H5O_TYPE_DATASET_F
o H5O_NAMED_DATATYPE_F
o H5O_TYPE_NTYPES_F
+ C++ API
- New Wrappers for C Functions H5P[s/g]et_libver_bounds
- New Wrappers to Get the Object Header's Version
- New DataType Constructor
+ Support for New Platforms, Languages, and Compilers
- Support for Linux 3.10.0-123.20.1.el7 added (LK - 2015/04/01)
* Bug Fixes since HDF5-1.8.14
+ Library
- Addition of Error Tracing Functionality to Several C API Calls
- H5Rdereference Now Checks for HADDR_UNDEF or Uninitialized References
- Fixed Bugs in H5Sextent_copy
+ Parallel Library
- Fixed a Potential Memory Error
- Parallel Test Problem Fixed
- MPE Support
+ Tools
- h5repack crashed on enumerated 8-bit type.
- h52gif crashed non-8bit images.
- perform/benchpar.c retired.
- Source perform/ directory moved to tools/perform.
+ Fortran API
- Fortran Fails with --enable-fortran2003 and Intel 15.x Compilers
- h5tenum_insert_f Does Not Work with Default 8 Byte Integers
(xlf compiler)
- Some Fortran APIs Never Returned the Error State
- Fixed h5pget_class_f
+ C++ API
- Combined Two H5File::getObjCount Overloaded Methods
The following two methods
o ssize_t getObjCount(unsigned types) const;
o ssize_t getObjCount() const;
were combined into one:
o ssize_t getObjCount(unsigned types = H5F_OBJ_ALL) const;
- Many Warnings Were Removed
- Functionality Deprecation
The following two constructors of classes AbstractDs, IdComponent,
H5Location, and H5Object are no longer appropriate after the data member
"id" had been moved from IdComponent to the sub-classes in previous
releases.
o (const hid_t h5_id);
o (const & original);
The copy constructors were no-op and removed in 1.8.15. The other
constructors will be removed from 1.10 release, and then from 1.8.17
if their removal does not cause any problems.
+ High-Level APIs:
- Suppress Warnings from Flex/Bison-generated Code
- Changed hdf5_hl.h to Include the HDF5 Main Library "hdf5.h"
- H5PTcreate_fl Does Not Convert to Memory Datatype
- Fix for H5LT Attribute Functions
+ Fortran High-Level APIs:
- Internal Library Fix for Missing Argument Declaration
- Build in thread-safe mode to allow parallel reads
* These are only unsupported to avoid confusing casual users.
The fotran and C++ libraries don't support thread-safe mode,
while the C library does. So you have to explicitly allow
building the thread-safe C library and the non-thread-safe C++
and fortran libraries in order to make sure only people who
have done their research do so. Since users are going to be
accessing this through other programs, this doesn't matter.
- Build fortran 2003 libraries
- Rebase hdf5-non_void_return.patch
- Remove irrelevant hdf5-configure-long-double.patch - update hdf5-non_void_return.patch for GCC 5.x - Tag baselibs.conf as source. - fix typos in ChangeLog - updated to 1.8.14:
* bugfix release, see RELEASE.txt s390zp37 1620310518
1.10.7-2.25 1.10.7-2.25 bin gif2h5 h52gif h5clear h5copy h5debug h5diff h5dump h5format_convert h5import h5jam h5ls h5mkgrp h5perf_serial h5redeploy h5repack h5repart h5stat h5unjam h5watch mirror_server mirror_server_stop /usr/lib/hpc/gnu7/hdf5/1.10.7/ /usr/lib/hpc/gnu7/hdf5/1.10.7/bin/ -fmessage-length=0 -grecord-gcc-switches -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector-strong -funwind-tables -fasynchronous-unwind-tables -fstack-clash-protection -g obs://build.suse.de/SUSE:SLE-15-SP3:GA/standard/e4a1e138ee8cd2ca218aa5f6455641ec-hdf5:gnu-hpc cpio xz 5 s390x-suse-linux
directory ELF 64-bit MSB shared object, IBM S/390, version 1 (SYSV), dynamically linked, interpreter /lib/ld64.so.1, BuildID[sha1]=874c681074b2e25954d0ffe8057a762dbc9fa175, for GNU/Linux 3.2.0, stripped ELF 64-bit MSB shared object, IBM S/390, version 1 (SYSV), dynamically linked, interpreter /lib/ld64.so.1, BuildID[sha1]=814e4d091ace0d0babfb22f05bf2893fb70454a1, for GNU/Linux 3.2.0, stripped ELF 64-bit MSB shared object, IBM S/390, version 1 (SYSV), dynamically linked, interpreter /lib/ld64.so.1, BuildID[sha1]=eb29a977ebb9437c5bd9cdd9500e4c40e499e085, for GNU/Linux 3.2.0, stripped ELF 64-bit MSB shared object, IBM S/390, version 1 (SYSV), dynamically linked, interpreter /lib/ld64.so.1, BuildID[sha1]=fa3326ee81746ed503f44faffdf1ea6e5f4af078, for GNU/Linux 3.2.0, stripped ELF 64-bit MSB shared object, IBM S/390, version 1 (SYSV), dynamically linked, interpreter /lib/ld64.so.1, BuildID[sha1]=4e796cbea9bb27035d2b45155eca354cb214b682, for GNU/Linux 3.2.0, stripped ELF 64-bit MSB shared object, IBM S/390, version 1 (SYSV), dynamically linked, interpreter /lib/ld64.so.1, BuildID[sha1]=789913fa77cc368994e6af809c825bb7311b8bff, for GNU/Linux 3.2.0, stripped ELF 64-bit MSB shared object, IBM S/390, version 1 (SYSV), dynamically linked, interpreter /lib/ld64.so.1, BuildID[sha1]=addf80ef9c232913528b1dc43548457d59e31ab3, for GNU/Linux 3.2.0, stripped ELF 64-bit MSB shared object, IBM S/390, version 1 (SYSV), dynamically linked, interpreter /lib/ld64.so.1, BuildID[sha1]=6a68e4aefcc694e3bb016ba2257d5fd1de9649bd, for GNU/Linux 3.2.0, stripped ELF 64-bit MSB shared object, IBM S/390, version 1 (SYSV), dynamically linked, interpreter /lib/ld64.so.1, BuildID[sha1]=e79ca899bce2a564a05e4d1a57132644ea912807, for GNU/Linux 3.2.0, stripped ELF 64-bit MSB shared object, IBM S/390, version 1 (SYSV), dynamically linked, interpreter /lib/ld64.so.1, BuildID[sha1]=676f423571e60878c8db9f38a7dc2eb53f6df07c, for GNU/Linux 3.2.0, stripped ELF 64-bit MSB shared object, IBM S/390, version 1 (SYSV), dynamically linked, interpreter /lib/ld64.so.1, BuildID[sha1]=6774b6c6cda5b377f85f7e67e3927c9ce2abcc79, for GNU/Linux 3.2.0, stripped ELF 64-bit MSB shared object, IBM S/390, version 1 (SYSV), dynamically linked, interpreter /lib/ld64.so.1, BuildID[sha1]=d4b7fcc1dcdad4706644346628d9fc9e41caaee2, for GNU/Linux 3.2.0, stripped ELF 64-bit MSB shared object, IBM S/390, version 1 (SYSV), dynamically linked, interpreter /lib/ld64.so.1, BuildID[sha1]=c30b6b615954be90acb2f24868f8b1baa55e2be0, for GNU/Linux 3.2.0, stripped POSIX shell script, ASCII text executable ELF 64-bit MSB shared object, IBM S/390, version 1 (SYSV), dynamically linked, interpreter /lib/ld64.so.1, BuildID[sha1]=0450f7254a8ed58f82819c30df1a957a8428311a, for GNU/Linux 3.2.0, stripped ELF 64-bit MSB shared object, IBM S/390, version 1 (SYSV), dynamically linked, interpreter /lib/ld64.so.1, BuildID[sha1]=e22ed3309765d6698dcabf21a95e41c88a308cbf, for GNU/Linux 3.2.0, stripped ELF 64-bit MSB shared object, IBM S/390, version 1 (SYSV), dynamically linked, interpreter /lib/ld64.so.1, BuildID[sha1]=6f8d31dd77d7dae543853721e82449186b733b00, for GNU/Linux 3.2.0, stripped ELF 64-bit MSB shared object, IBM S/390, version 1 (SYSV), dynamically linked, interpreter /lib/ld64.so.1, BuildID[sha1]=e2e627d76de2d1ae0495b81bc0ba14ef040de92c, for GNU/Linux 3.2.0, stripped ELF 64-bit MSB shared object, IBM S/390, version 1 (SYSV), dynamically linked, interpreter /lib/ld64.so.1, BuildID[sha1]=607f011a69f2c092d97c8697fabbc01c80f044cc, for GNU/Linux 3.2.0, stripped ELF 64-bit MSB shared object, IBM S/390, version 1 (SYSV), dynamically linked, interpreter /lib/ld64.so.1, BuildID[sha1]=c62b80e356c5fd00687ea74e1acc5e78f3f6a75f, for GNU/Linux 3.2.0, stripped ELF 64-bit MSB shared object, IBM S/390, version 1 (SYSV), dynamically linked, interpreter /lib/ld64.so.1, BuildID[sha1]=690707eeb49c1b11b5cc97fbaa93c1331b3b03ef, for GNU/Linux 3.2.0, stripped $ 0 6 D P \ l x R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R R э anR6L utf-8 e86ed7c3261fa5f205a63799579ec29d1abe9a133cf0a098e67a47d17234a049 ? 7zXZ
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